PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 656aa    MW: 67977.6 Da    PI: 7.9918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-055678123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Sopen02g013980.1 56 FVCEICNKGFQRDQNLQLHRRGH 78
                      89*******************88 PP

2zf-C2H216.91.8e-05132154123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+Lk H++ +
  Sopen02g013980.1 132 WKCDKCSKKYAVQSDLKAHLKIC 154
                       58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.99E-85578No hitNo description
SMARTSM003550.0175678IPR015880Zinc finger, C2H2-like
PfamPF128740.00285678No hitNo description
PROSITE profilePS5015710.9495678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035523097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.99E-8127152No hitNo description
SMARTSM0035538132152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871132160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MNDCVGSGEV SVLSSGDQAA PCKEAAKKKR NLPGMPDPNA EVVALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVRKRVYVCP ETTCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC  180
DVLAKDTEKA QNAVTTPIAE EDLKVQVDVS STPQTPRTPP PSSEPPAVPS PAAPEPLPPP  240
GSPSTAVVSS DSPIQHPESP HTNSNGTITK HDIEETTAKS RLSGICSSSS CTGCTNSNCF  300
TSLTGICSSS WSSSSNGSTS SSSIFSSLTG ICSSTRSSSS NGSTGSISVF PSLSGICSNS  360
RSSSSNGSTQ SSSIFSSSTG ICSSSIFPSS TGICSGSSIF SSSTGIYSNS SSLSSNRSTS  420
GSSIFTSLTG ICSSSSNSSS NSTFASLFAS STASGSLPSQ APQFTDWFQS VAPAPPPDIE  480
PPSSMEPISL CLAMNHGSSV FGSTGQERMQ YAAAPQPSMS ATALLQKAAQ MGATATNSSL  540
LRGLGILSSS SSSSGQHEWN GRQIDTDGAT LAAGLGLGLP CDDGSGLKEL MLGTPSVFGP  600
KHPTLDLLGL GMAAGGGSTP GLSALITSMG GNLDVAAAAR PFDSGEFCGK EFGRNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066851.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ71e-114IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLK4B6I20.0K4B6I2_SOLLC; Uncharacterized protein
STRINGSolyc02g062940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-97C2H2-like zinc finger protein